I am sorry about this problem. I will properly fix it for the next version, but here is a quick and dirty fix so that you can continue your work. Please open up Node.cs and change the .position property to be like this:
When you re-open your graph after the change, all nodes outside the min 0,0 bounds will be forced inside valid canvas space.
Please let me know if that works for you for the time being until the proper fix.
Thank you!
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